miREE is an ensemble of two parts with integrated roles in the prediction an Ab-initio module followed by an SVM module (machine learning technique)

Related Applications

Ab Initio:
miranda,targetscan, Pictar

Machine learning:
Targetboost, miTarget, ensemble algorithm, NBmiRTar, miRtarget2, miRTif, Targetminer,

microRNA sequences
mRNA sequences
Ensembl Genome Browser
miRNA experimental records :
miRecords Tarbase


Use miREE to make your microRNA target predictions

Please select the species to make your prediction


Use the Genetic Algorithm to obtain the Candidate binding sites for a microRNA

Use miREE to make your predictions

Select training set for the machine learning part

You can use the training default settings
(miREE Experimental training set)


You can train the machine learning module

If you want to use your own dataset to make the training of the machine learning part

Please upload a file in this format for the input training data set

When the file is uploaded then select train

Predictions for : Homo Sapiens

miRNA selection

If you could not find the miRNA id on the list, Please insert the miRNA (Fasta format)
to make your predictions

mRNA selection

If you could not find the mRNA id on the list, Please insert the mRNA (Fasta format)

If you want to make predictions on other species go to the respective page

* Caenorhabditis elegans

* Mus Musculus