Summary

miREE is an ensemble of two parts with integrated roles in the prediction an Ab-initio module followed by an SVM module (machine learning technique)

Related Applications

Ab Initio:
miranda,targetscan, Pictar,RNA22,PITA,DIANA,EIMMO

Machine learning:
Targetboost, miTarget, ensemble algorithm, NBmiRTar, miRtarget2, miRTif, Targetminer,

Databases:
microRNA sequences
mirbase
mRNA sequences
Ensembl Genome Browser
miRNA experimental records :
miRecords Tarbase

Contact

paula.reyesherrera@polito.it










You can use the Genetic algorithm to generate a set of Candidate binding sites for a miRNA


Please select the species and the miRNA id

Species :


miRNA id :


Press OK to start the algorithm,


Wait for the output of Candidate Virtual binding sites set


SEE : Ab-Initio Part scheme